Index

B

BaseSampledParam (class in komanawa.BASE) (class in komanawa.BASE.BASE_solver) (class in komanawa.BASE.generators) (class in komanawa.BASE.generators.base_sampled_param) (class in komanawa.BASE.multisite_with_dilution) (class in komanawa.BASE.runtime_memtest)

BASESolver (class in komanawa.BASE) (class in komanawa.BASE.BASE_solver) (class in komanawa.BASE.multisite_base_solver) (class in komanawa.BASE.runtime_memtest) (class in komanawa.BASE.utils)

C

comptest() (NormalPathGenerator method), [1], [2] (ParentPathChange method), [1], [2], [3] (PseudoUniformChangeGenerator method), [1] (UniformPathGenerator method), [1] convert_age_to_decimal_years() (BASESolver method), [1], [2], [3], [4]

convert_age_to_dt() (BASESolver method), [1], [2], [3], [4] convert_decimal_years_to_age() (BASESolver method), [1], [2], [3], [4] convert_decimal_years_to_dt() (BASESolver method), [1], [2], [3], [4] convert_dt_to_age() (BASESolver method), [1], [2], [3], [4] convert_dt_to_decimal_years() (BASESolver method), [1], [2], [3], [4]

E

export_source_receptor() (BASESolver method), [1], [2], [3], [4] (MultiSiteBASESolver method), [1], [2]

G

get_colors() (MultiSiteBASESolver method), [1], [2] get_dilution_parameters() (MultiSiteDilutionBASESolver method), [1] get_parameter_log() (BASESolver method), [1], [2], [3], [4]

get_rmse() (BASESolver method), [1], [2], [3], [4] (MultiSiteBASESolver method), [1], [2] get_ss_conc() (BASESolver method), [1], [2], [3], [4] (MultiSiteDilutionBASESolver method), [1]

K

komanawa.BASE module komanawa.BASE.BASE_solver module komanawa.BASE.generators module komanawa.BASE.generators.base_sampled_param module komanawa.BASE.generators.normal_path_change module komanawa.BASE.generators.parent_path_change module komanawa.BASE.generators.pseudo_uniform_change_generator module

komanawa.BASE.generators.uniform_path_generator module komanawa.BASE.multiprocess_support module komanawa.BASE.multisite_base_solver module komanawa.BASE.multisite_with_dilution module komanawa.BASE.runtime_memtest module komanawa.BASE.utils module

L

load_logps_params() (BASESolver method), [1], [2], [3], [4] load_npz_source_receptor() (in module komanawa.BASE) (in module komanawa.BASE.utils) log_likelihood_no_sigma() (BASESolver method), [1], [2], [3], [4] (MultiSiteBASESolver method), [1], [2]

log_likelihood_sigma() (BASESolver method), [1], [2], [3], [4] (MultiSiteBASESolver method), [1], [2] logpdf() (NormalPathGenerator method), [1], [2] (PseudoUniformChangeGenerator method), [1] (UniformPathGenerator method), [1]

M

make_forward_ts_deltas() (BASESolver method), [1], [2], [3], [4] make_receptor_points() (BASESolver method), [1], [2], [3], [4] make_source_receptor_data() (BASESolver method), [1], [2], [3], [4] (MultiSiteBASESolver method), [1], [2] memory_profile() (in module komanawa.BASE.runtime_memtest) module komanawa.BASE komanawa.BASE.BASE_solver komanawa.BASE.generators komanawa.BASE.generators.base_sampled_param komanawa.BASE.generators.normal_path_change komanawa.BASE.generators.parent_path_change komanawa.BASE.generators.pseudo_uniform_change_generator komanawa.BASE.generators.uniform_path_generator komanawa.BASE.multiprocess_support komanawa.BASE.multisite_base_solver komanawa.BASE.multisite_with_dilution komanawa.BASE.runtime_memtest komanawa.BASE.utils

MultiSiteBASESolver (class in komanawa.BASE) (class in komanawa.BASE.multisite_base_solver) (class in komanawa.BASE.multisite_with_dilution) MultiSiteDilutionBASESolver (class in komanawa.BASE) (class in komanawa.BASE.multisite_with_dilution)

N

NormalPathGenerator (class in komanawa.BASE.generators) (class in komanawa.BASE.generators.normal_path_change) (class in komanawa.BASE.runtime_memtest)

P

parameters_match_log() (BASESolver method), [1], [2], [3], [4] ParentPathChange (class in komanawa.BASE.generators.normal_path_change) (class in komanawa.BASE.generators.parent_path_change) (class in komanawa.BASE.generators.pseudo_uniform_change_generator) (class in komanawa.BASE.generators.uniform_path_generator) plot_best_receptor() (BASESolver method), [1], [2], [3], [4] (MultiSiteBASESolver method), [1], [2] plot_best_source() (BASESolver method), [1], [2], [3], [4] plot_best_source_receptor() (BASESolver method), [1], [2], [3], [4] (MultiSiteBASESolver method), [1], [2] plot_breakpoints() (BASESolver method), [1], [2], [3], [4] plot_comp_test() (in module komanawa.BASE.generators.parent_path_change) (in module komanawa.BASE.multisite_with_dilution) plot_dilution_parameters() (MultiSiteDilutionBASESolver method), [1] plot_log_ps() (BASESolver method), [1], [2], [3], [4]

plot_measured() (BASESolver method), [1], [2], [3], [4] (MultiSiteBASESolver method), [1], [2] plot_path() (NormalPathGenerator method), [1], [2] (PseudoUniformChangeGenerator method), [1] (UniformPathGenerator method), [1] plot_single_pdf() (BASESolver method), [1], [2], [3], [4] plot_test() (NormalPathGenerator method), [1], [2] (ParentPathChange method), [1], [2], [3] (PseudoUniformChangeGenerator method), [1] (UniformPathGenerator method), [1] plot_test_dilution_parameters() (MultiSiteDilutionBASESolver method), [1] predict_bespoke() (BASESolver method), [1], [2], [3], [4] (MultiSiteBASESolver method), [1], [2] PseudoUniformChangeGenerator (class in komanawa.BASE.generators) (class in komanawa.BASE.generators.pseudo_uniform_change_generator)

R

run_base() (BASESolver method), [1], [2], [3], [4] run_multiprocess() (in module komanawa.BASE.BASE_solver) (in module komanawa.BASE.multiprocess_support)

runtime_test() (in module komanawa.BASE.runtime_memtest) rvs() (NormalPathGenerator method), [1], [2] (PseudoUniformChangeGenerator method), [1] (UniformPathGenerator method), [1]

S

serialize() (BaseSampledParam method), [1], [2], [3], [4], [5]

set_dilution_parameters() (MultiSiteDilutionBASESolver method), [1] set_log_likelihood_scaler() (MultiSiteBASESolver method), [1], [2]

T

test_dilution_parameters() (MultiSiteDilutionBASESolver method), [1]

U

UniformPathGenerator (class in komanawa.BASE.generators) (class in komanawa.BASE.generators.uniform_path_generator)